PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010874
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 499aa    MW: 56005.4 Da    PI: 6.7264
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010874genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-14231281155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  DCAR_010874 231 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 281
                  89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-6159202IPR001471AP2/ERF domain
CDDcd000187.42E-25231291No hitNo description
PfamPF008471.3E-9231281IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-17231291IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-16232289IPR001471AP2/ERF domain
SMARTSM003803.8E-30232295IPR001471AP2/ERF domain
PROSITE profilePS5103215.461232289IPR001471AP2/ERF domain
PRINTSPR003674.6E-6233244IPR001471AP2/ERF domain
PRINTSPR003674.6E-6271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MWNLNDSPSH ERDEEESEEG CSSPFDGDGP EFDKGKRVGS MSNSSSSAVV IEDGSEEEDG  60
SRRKRSSSKI FGFSVNNDNS PELEPPVITR QFFPVDESVE TMGIASEASA TSTFPRSHWV  120
GVKFGQTEPP RTAGVAGKST EVPQPLKKSR RGPRSRSSQY RGVTFYRRTG RWESHICAYD  180
RAAIKFRGVE ADINFVLEDY EEDLKQMSNL TKEEFVHVLR RQSTGFPRGS SKYRGVTLHK  240
CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP SIYEIELHPT  300
ETSSNQRDHN LDLSLGSTGS KQKELGDDHS HNQQGRDQQS ASMGYPMNSW QNRGIRPMLS  360
LQQQESGRNQ LESQRRDGYN EMETLQLLSQ THLQSPGSAR PQDMHSAYWN NYTKVSEVQQ  420
GVHMFPTQHN SNYQMQFSSS SSIGGQSSAS DYHNQWRSSG PQVFASAAAS SGFPPQQIVR  480
SDPNWLHTNG FHSYMRPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267881.10.0transcription factor APETALA2
SwissprotP479271e-115AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLC1KBJ20.0C1KBJ2_VITVI; Transcription factor APETALA2
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-106AP2 family protein